Form Submission: Session, Poster, Demo Submission

Demo/Poster Number

Tilikum
29

Contact Information
First Name: 
Jeffrey
Last Name: 
Grethe
Session Information
Presentation Title: 
The bioCADDIE Data Discovery Index (DDI) Prototype: Laying the Groundwork for Biomedical Data Discovery, Sharing and Reuse
Description: 
bioCADDIE (biomedical and healthCAre Data Discovery Index Ecosystem) is a cooperative research effort between biomedical researchers, informaticians, administrative, publishing and funding communities, to facilitate data discovery, sharing and reuse via the development of a Data Discovery Index (DDI). The Core Technology Development Team (CDT) is developing the functioning prototype of the DDI in conjunction with members of the community through Pilot Projects, Working Groups, and supplemental funding. The bioCADDIE CDT is implementing the backbone of the prototype and is working with the community to test and integrate the modules developed via the supplements and pilot projects. Further, the CDT will acquire user-specific input through the evaluation of the prototype by focus groups of end users and the evaluation will iteratively inform the development of the prototype. The primary objective of the CDT is to design and implement a DDI web application with a user-friendly interface that enables users to browse, search, get recommendations of datasets that best satisfy their specific interests, preferences, and needs. The CDT has initiated the development process by (1) designing a modular architecture for the prototype backbone into which various projects can be integrated, (2) creating a repository ingestion and indexing pipeline that maps to specifications provided by various working groups in the bioCADDIE community and (3) establishing a search engine for locating datasets from a defined set of repositories. The pre-prototype version is currently available for exploration at http://datamed.biocaddie.org/. The next phase in the development process is to increase the number of repositories that are ingested and indexed as well as implement more search-related functions and conduct user and usability testing of the website (and search engine) in order to finalize its design and functionality.
Presenter Information
Same As Contact: 
Yes
Organization/Affiliation: 
University of California San Diego
ORCID ID: 
0000-0001-5212-7052
Contributors
First Name: 
Lucila
Last Name: 
Ohno-Machado
Organization/Affiliation: 
University of California San Diego
Project Role: 
Principal Investigator
First Name: 
George
Last Name: 
Alter
Organization/Affiliation: 
University of Michigan
Project Role: 
Author/Researcher
First Name: 
Muhammad
Last Name: 
Amith
Organization/Affiliation: 
University of Texas Health Science Center at Houston
Project Role: 
Author/Researcher
First Name: 
Xiaoling
Last Name: 
Chen
Organization/Affiliation: 
University of Texas Health Science Center at Houston
Project Role: 
Author/Researcher
First Name: 
Trevor
Last Name: 
Cohen
Organization/Affiliation: 
University of Texas Health Science Center at Houston
Project Role: 
Author/Researcher
First Name: 
Claudiu
Last Name: 
Farcas
Organization/Affiliation: 
University of California San Diego
Project Role: 
Author/Researcher
First Name: 
Ian
Last Name: 
Fore
Organization/Affiliation: 
National Institutes of Health
Project Role: 
Author/Researcher
First Name: 
Alejandra
Last Name: 
Gonzalez-Beltran
Organization/Affiliation: 
University of Oxford
Project Role: 
Author/Researcher
First Name: 
Jeffrey
Last Name: 
Grethe
Organization/Affiliation: 
University of California San Diego
Project Role: 
Author/Researcher
First Name: 
Anupama
Last Name: 
Gururaj
Organization/Affiliation: 
University of Texas Health Science Center at Houston
Project Role: 
Author/Researcher
First Name: 
Min
Last Name: 
Jiang
Organization/Affiliation: 
University of Texas Health Science Center at Houston
Project Role: 
Author/Researcher
First Name: 
Todd
Last Name: 
Johnson
Organization/Affiliation: 
University of Texas Health Science Center at Houston
Project Role: 
Author/Researcher
First Name: 
Yueling
Last Name: 
Li
Organization/Affiliation: 
University of California San Diego
Project Role: 
Author/Researcher
First Name: 
Ruiling
Last Name: 
Liu
Organization/Affiliation: 
University of Texas Health Science Center at Houston
Project Role: 
Author/Researcher
First Name: 
Burak
Last Name: 
Ozyurt
Organization/Affiliation: 
University of California San Diego
Project Role: 
Author/Researcher
First Name: 
Philippe
Last Name: 
Rocca-Serra
Organization/Affiliation: 
University of Oxford
Project Role: 
Author/Researcher
First Name: 
Susanna-Assunta
Last Name: 
Sansone
Organization/Affiliation: 
University of Oxford
Project Role: 
Author/Researcher
First Name: 
Ergin
Last Name: 
Soysal
Organization/Affiliation: 
University of Texas Health Science Center at Houston
Project Role: 
Author/Researcher
First Name: 
Cui
Last Name: 
Tao
Organization/Affiliation: 
University of Texas Health Science Center at Houston
Project Role: 
Author/Researcher
First Name: 
Hua
Last Name: 
Xu
Organization/Affiliation: 
University of Texas Health Science Center at Houston
Project Role: 
Author/Researcher