Form Submission: Session, Poster, Demo Submission

Demo/Poster Number

Sauvie Island
46

Contact Information
First Name: 
Tom
Last Name: 
Gillespie
Session Information
Presentation Title: 
SciBot: automated extraction and resolution of Research Resource Identifiers (RRIDs) using a web-based annotation client
Description: 
We will demonstrate SciBot, an automated RRID annotation tool. Research resource identifiers (RRIDs) have proven to be an extremely useful and simple way to provide accurate information about research resources in the published literature. One side effect of the fact that RRIDs are simply text strings is that they are not automatically linked to their associated metadata records. SciBot remidies this by identifying RRIDs in existing papers and annotating them using the Hypothes.is web annotation tool. Hypothes.is annotation then automatically resolves the RRID metadata and displays it alongside the article. Research resource identifiers (RRIDs) are a simple, machine processable method to uniquely reference research resources including antibodies, model organisms and software tools inside of the biomedical literature. The RRID is a simple and uniform syntax that is a very small departure from standard reagent citation practice, but allows authors to reference reagents in the methods section uniquely. The Resource Identification Initiative (RII) is designed to help researchers sufficiently cite the key resources used to produce the scientific findings reported in the biomedical literature. A diverse group of collaborators are leading the project, including the Neuroscience Information Framework, with the support of the National Institutes of Health and the International Neuroinformatics Coordinating Facility.
Presenter Information
Same As Contact: 
Yes
Organization/Affiliation: 
UCSD
ORCID ID: 
0000-0002-7509-4801
Contributors
First Name: 
Maryann
Last Name: 
Martone
Organization/Affiliation: 
UCSD
First Name: 
Jeffrey
Last Name: 
Grethe
Organization/Affiliation: 
UCSD
First Name: 
Jon
Last Name: 
Udell
Organization/Affiliation: 
Hypothes.is
First Name: 
Anita
Last Name: 
Bandrowski
Organization/Affiliation: 
UCSD
First Name: 
Tom
Last Name: 
Gillespie
Organization/Affiliation: 
UCSD