Resource Identification Initiative

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RII

Looking to get RRIDs for your paper (scicrunch.org/resources)

The Resource Identification Initiative has been launched and moved beyond a pilot phase. We invite publishers, editors, authors, biocurators, librarians, resource provides, and vendors to participate.

Authors can participate by adding RRIDs to their papers, go to scicrunch.org/resources

The Resource Identifiers (RRIDs) are in the published literature; publications currently reporting RRIDs can be found in Google Scholar PubMed Central or PubMed

The Resource Identification Initiative (#RRID) is designed to help researchers sufficiently cite the key resources used to produce the scientific findings reported in the biomedical literature. A diverse group of collaborators are leading the project, including the Neuroscience Information Framework with the support of the National Institutes of Health and the International Neuroinformatics Coordinating Facility.

Resources (e.g. antibodies, model organisms, and software projects) reported in the biomedical literature often lack sufficient detail to enable reproducibility or reuse. For example, catalog numbers for antibody reagents are infrequently reported, and the version numbers for software programs used for data analysis are often omitted. This has been called out as a serious enough problem by the NIH to introduce new guidelines for Rigor and Transparency for almost all awards in starting in May of 2016. 

These guidelines argue for authentication of key research resources, and transparency of how they are reported.

RII

The Resource Identification Initiative aims to enable resource transparency within the biomedical literature through promoting the use of unique Research Resource Identifiers (RRIDs). In addition to being unique, RRID’s meet three key criteria, they are:

  1. Machine readable.
  2. Free to generate and access.
  3. Consistent across publishers and journals.

The first step in this project was to test the feasibility of the system for a limited set of resources: antibodies, model organisms (mice, zebrafish, flies) and tools (i.e. software and databases) in the biomedical literature. Authors publishing in participating journals were asked to provide RRID's for their resources. RRID's will be drawn from:

To make it easy for authors to find the appropriate RRID's and to format their citations, we have created the Resource Identification Portal, where authors can search across all of sources from a single location.

In addition to facilitating reproducibility and reuse, the inclusion of RRID citations in the literature allows resource providers, funders and others to better track usage and impact. Ultimately, we believe that the outcome of the pilot phase showed:

  • The need for better reporting of materials and methods to promote reproducible science.  Proper resource identification is a step towards this goal.
  • The need for a cultural shift in the way we write and structure papers. We must recognize the increasing dominant model of interacting with the literature through automated agents; therefore, the conventions we adopt should be tailored towards greater machine-processability.
  • The need for a cultural shift in the way we view the literature. The literature is not only a source of papers for people to read, but a connected set of data: observations and claims in biomedicine that span journals, publishers, and formats. The synthesis of information from the literature and other sources requires universal machine access to key entities.

The pilot project was an outcome of a meeting held at the NIH on Jun 26th, 2013.  A draft report from the meeting is available. We are working with commercial partners, tools builders and others in the FORCE11 community to provide a set of interfaces that will allow authors to access the data set acquired in various ways that will demonstrate the power of this approach.  We hope the Resource Identification Initiative will be a small step towards improving scholarly communication and scientific reproducibility.

Please see this guide if you are interested in participating.  For an overview of the project visit the FAQ.


ENDORSE THIS PROJECT

Relevant publications

Bandrowski et al. (2015) The Resource Identification Initiative: A cultural shift in publishing.

   Co-Published: Journal of Comparative Neurology [10.1002/cne.23913], Brain and Behavior [10.1002/brb3.417], F1000 Research [10.12688/f1000research.6555.2], and Neuroinformatics [10.1007/s12021-015-9284-3].

 

Vasilevsky et al.  (2013) On the reproducibility of science: unique identification of research resources in the biomedical literature  Peer J.

Another reason why we are doing this:  Faulty Antibodies Continue to Enter US and European Markets, Warns Top Clinical Chemistry Researcher

Helsby et al (2013) Reporting research antibody use: how to increase experimental reproducibility. F1000 Research

Biocompare:  Taking Steps Towards Scientific Reproducibility

Group Events
Working Group Participation

Comments

Fake lab supplies? Not if we have RRIDs...possibly.

https://www.statnews.com/2017/05/18/fake-lab-supplies-research/

 

Thanks to our friends at Thermo Fisher Scientific and Lab Roots, there is a recording of the live panel discussion about validation of antibodies and of course RRIDs, available:

https://www.labroots.com/ms/virtual-event/thermo-fisher-scientific-prote...

http://www.biopharminternational.com/enhancing-bioprocessing-efficiencie...

Nice take on RRIDs and reproducibility as they can help manufacturers. 

http://www.biocompare.com/Reproducibility/

The reproducibility documentary is out! 

People interviewed: Lawrence Tabak (NIH), Veronique Kiermer (PLoS), Begley & Ellis!  ...oh myyy!